Meet Barot

I'm smiling

This website is perpetually under construction. Thank you for your infinite patience!

Hello, my name is Meet Barot. I'm interested in machine learning, proteins, networks, and decentralization. I'm a PhD student at New York University in the Center for Data Science.
If you'd like to chat, email me at my name (no spaces or periods or anything) at nyu.edu.

My GitHub Profile
My Thoughts on Proteins
Other Things

ISMB 2022 Material

Function SIG Poster: Automated Protein Function Description for Novel Class Discovery

ISMB/ECCB 2021 Material

Function SIG Talk Presentation Slides: seqSCAN: Unsupervised Classification of Proteins for New Function Discovery

My publications

Meet Barot, Vladimir Gligorijević, Richard Bonneau, Kyunghyun Cho, Automated Protein Function Description for Novel Class Discovery, bioRxiv 2022.10.13.512154; doi: https://doi.org/10.1101/2022.10.13.512154

Meet Barot, Vladimir Gligorijević, Kyunghyun Cho, Richard Bonneau, NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity, Bioinformatics, 2021;, btab098, https://doi.org/10.1093/bioinformatics/btab098
NetQuilt Simons Foundation News Article
NetQuilt CDS Blog Post

Vladimir Gligorijević, Meet Barot, Richard Bonneau, deepNF: deep network fusion for protein function prediction, Bioinformatics, Volume 34, Issue 22, 15 November 2018, Pages 3873-3881, https://doi.org/10.1093/bioinformatics/bty440

As a function prediction method submitter to the CAFA 3 challenge:
Zhou, N., Jiang, Y., Bergquist, T.R. et al. The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biol 20, 244 (2019). https://doi.org/10.1186/s13059-019-1835-8

Recorded Talks

Meet Barot, Daniel Berenberg, James Morton, Vladimir Gligorijević, Kyunghyun Cho, Richard Bonneau, (2020). Learning sequence, structure and network features for protein function prediction. 20-minute talk delivered virtually at the ISMB Conference. Recording

Meet Barot, Vladimir Gligorijević, Kyunghyun Cho, Richard Bonneau, (2019). Graph-Regularized Autoencoders for Protein Feature Learning. 10-minute talk delivered at the ISMB/ECCB Joint Conference, Basel, Switzerland. Recording

Other links

Zhuolin's jewelry store! (Etsy alternative)


XMR: 89aagPnhRjZeXF4nVKnJEF2ip5ezn7BMsNydwbQ4xKQ49zrqMrqTRQBCz1JVnYron7Wab44hNs9TUPwmNeVk9z6pHoat4vW